BitMagic-C++
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Bit-vector serialization class. More...
#include <bmserial.h>
Data Structures | |
struct | bookmark_state |
Bookmark state structure. More... | |
Public Types | |
typedef BV | bvector_type |
typedef bvector_type::allocator_type | allocator_type |
typedef bvector_type::blocks_manager_type | blocks_manager_type |
typedef bvector_type::statistics | statistics_type |
typedef bvector_type::block_idx_type | block_idx_type |
typedef bvector_type::size_type | size_type |
typedef byte_buffer< allocator_type > | buffer |
typedef bm::bv_ref_vector< BV > | bv_ref_vector_type |
typedef bm::xor_sim_model< BV > | xor_sim_model_type |
typedef xor_sim_model_type::block_match_chain_type | block_match_chain_type |
Public Member Functions | |
serializer (const allocator_type &alloc=allocator_type(), bm::word_t *temp_block=0) | |
Constructor. More... | |
serializer (bm::word_t *temp_block) | |
More... | |
~serializer () | |
Compression level settings <br> | |
void | set_compression_level (unsigned clevel) BMNOEXCEPT |
Set compression level. More... | |
unsigned | get_compression_level () const BMNOEXCEPT |
Get current compression level. More... | |
Serialization Methods <br> | |
size_type | serialize (const BV &bv, unsigned char *buf, size_t buf_size) |
Bitvector serialization into memory block. More... | |
void | serialize (const BV &bv, typename serializer< BV >::buffer &buf, const statistics_type *bv_stat=0) |
Bitvector serialization into buffer object (resized automatically) More... | |
void | optimize_serialize_destroy (BV &bv, typename serializer< BV >::buffer &buf) |
Bitvector serialization into buffer object (resized automatically) Input bit-vector gets optimized and then destroyed, content is NOT guaranteed after this operation. More... | |
const size_type * | get_compression_stat () const BMNOEXCEPT |
Return serialization counter vector. More... | |
void | allow_stat_reset (bool allow) BMNOEXCEPT |
Enable/disable statistics reset on each serilaization. More... | |
void | reset_compression_stats () BMNOEXCEPT |
Reset all accumulated compression statistics. More... | |
void | gap_length_serialization (bool value) BMNOEXCEPT |
Set GAP length serialization (serializes GAP levels of the original vector) More... | |
void | byte_order_serialization (bool value) BMNOEXCEPT |
Set byte-order serialization (for cross platform compatibility) More... | |
void | set_bookmarks (bool enable, unsigned bm_interval=256) BMNOEXCEPT |
Add skip-markers to serialization BLOB for faster range decode at the expense of some BLOB size increase. More... | |
void | set_sparse_cutoff (unsigned cutoff) BMNOEXCEPT |
Fine tuning for Binary Interpolative Compression (levels 5+) The parameter sets average population count per block (64Kbits) below which block is considered very sparse. More... | |
void | set_ref_vectors (const bv_ref_vector_type *ref_vect) |
Attach collection of reference vectors for XOR serialization (no transfer of ownership for the pointers) More... | |
bool | compute_sim_model (xor_sim_model_type &sim_model, const bv_ref_vector_type &ref_vect, const bm::xor_sim_params ¶ms) |
Calculate XOR similarity model for ref_vector refernece vector must be associated before. More... | |
void | set_sim_model (const xor_sim_model_type *sim_model) BMNOEXCEPT |
Atach XOR similarity model (must be computed by the same ref vector) More... | |
void | set_curr_ref_idx (size_type ref_idx) BMNOEXCEPT |
Set current index in rer.vector collection (not a row idx or plain idx) More... | |
void | encode_header (const BV &bv, bm::encoder &enc) BMNOEXCEPT |
Encode serialization header information. More... | |
void | encode_gap_block (const bm::gap_word_t *gap_block, bm::encoder &enc) |
More... | |
void | gamma_gap_block (const bm::gap_word_t *gap_block, bm::encoder &enc) BMNOEXCEPT |
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void | gamma_gap_array (const bm::gap_word_t *gap_block, unsigned arr_len, bm::encoder &enc, bool inverted=false) BMNOEXCEPT |
Encode GAP block as delta-array with Elias Gamma coder. More... | |
void | encode_bit_array (const bm::word_t *block, bm::encoder &enc, bool inverted) BMNOEXCEPT |
Encode bit-block as an array of bits. More... | |
void | gamma_gap_bit_block (const bm::word_t *block, bm::encoder &enc) BMNOEXCEPT |
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void | gamma_arr_bit_block (const bm::word_t *block, bm::encoder &enc, bool inverted) BMNOEXCEPT |
More... | |
void | bienc_arr_bit_block (const bm::word_t *block, bm::encoder &enc, bool inverted) BMNOEXCEPT |
More... | |
void | bienc_arr_sblock (const BV &bv, unsigned sb, bm::encoder &enc) BMNOEXCEPT |
More... | |
void | bienc_gap_bit_block (const bm::word_t *block, bm::encoder &enc) BMNOEXCEPT |
encode bit-block as interpolated bit block of gaps More... | |
void | interpolated_arr_bit_block (const bm::word_t *block, bm::encoder &enc, bool inverted) BMNOEXCEPT |
More... | |
void | interpolated_gap_bit_block (const bm::word_t *block, bm::encoder &enc) BMNOEXCEPT |
encode bit-block as interpolated gap block More... | |
void | interpolated_gap_array (const bm::gap_word_t *gap_block, unsigned arr_len, bm::encoder &enc, bool inverted) BMNOEXCEPT |
Encode GAP block as an array with binary interpolated coder. More... | |
void | interpolated_gap_array_v0 (const bm::gap_word_t *gap_block, unsigned arr_len, bm::encoder &enc, bool inverted) BMNOEXCEPT |
More... | |
void | interpolated_encode_gap_block (const bm::gap_word_t *gap_block, bm::encoder &enc) BMNOEXCEPT |
More... | |
void | encode_bit_interval (const bm::word_t *blk, bm::encoder &enc, unsigned size_control) BMNOEXCEPT |
Encode BIT block with repeatable runs of zeroes. More... | |
void | encode_bit_digest (const bm::word_t *blk, bm::encoder &enc, bm::id64_t d0) BMNOEXCEPT |
Encode bit-block using digest (hierarchical compression) More... | |
void | encode_xor_match_chain (bm::encoder &enc, const block_match_chain_type &mchain) BMNOEXCEPT |
Encode XOR match chain. More... | |
unsigned char | find_gap_best_encoding (const bm::gap_word_t *gap_block) BMNOEXCEPT |
Determine best representation for GAP block based on current set compression level. More... | |
unsigned char | find_bit_best_encoding (const bm::word_t *block) BMNOEXCEPT |
Determine best representation for a bit-block. More... | |
unsigned char | find_bit_best_encoding_l5 (const bm::word_t *block) BMNOEXCEPT |
Determine best representation for a bit-block (level 5) More... | |
void | reset_models () BMNOEXCEPT |
void | add_model (unsigned char mod, unsigned score) BMNOEXCEPT |
More... | |
void | xor_tmp_product (const bm::word_t *s_block, const block_match_chain_type &mchain, unsigned i, unsigned j) BMNOEXCEPT |
Compute digest based XOR product, place into tmp XOR block. More... | |
static void | process_bookmark (block_idx_type nb, bookmark_state &bookm, bm::encoder &enc) BMNOEXCEPT |
Check if bookmark needs to be placed and if so, encode it into serialization BLOB. More... | |
Bit-vector serialization class.
Class designed to convert sparse bit-vectors into a single block of memory ready for file or database storage or network transfer.
Reuse of this class for multiple serializations (but not across threads). Class resue offers some performance advantage (helps with temp memory reallocations).
Definition at line 75 of file bmserial.h.
bm::serializer< BV >::serializer | ( | const allocator_type & | alloc = allocator_type() , |
bm::word_t * | temp_block = 0 |
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Constructor.
alloc | - memory allocator |
temp_block | - temporary block for various operations (if NULL it will be allocated and managed by serializer class) Temp block is used as a scratch memory during serialization, use of external temp block allows to avoid unnecessary re-allocations. |
Temp block attached is not owned by the class and NOT deallocated on destruction.
Definition at line 1170 of file bmserial.h.
References bm::gap_max_bits.
bm::serializer< BV >::serializer | ( | bm::word_t * | temp_block | ) |
Definition at line 1203 of file bmserial.h.
References bm::gap_max_bits.
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Definition at line 1655 of file bmserial.h.
References BM_ASSERT.
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Enable/disable statistics reset on each serilaization.
Definition at line 202 of file bmserial.h.
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Definition at line 2330 of file bmserial.h.
References bm::bit_block_convert_to_arr().
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Definition at line 2414 of file bmserial.h.
References bm::bit_out< TEncoder >::bic_encode_u32_cm(), BM_ASSERT, bm::convert_sub_to_arr(), bm::sblock_flag_len16, bm::sblock_flag_max16, bm::sblock_flag_max24, bm::sblock_flag_max32, bm::sblock_flag_min16, bm::sblock_flag_min24, bm::sblock_flag_min32, bm::sblock_flag_sb16, bm::sblock_flag_sb32, bm::set_sblock_bienc, and bm::set_sub_total_bits.
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encode bit-block as interpolated bit block of gaps
Definition at line 2355 of file bmserial.h.
References bm::bit_out< TEncoder >::bic_encode_u16(), bm::bit_to_gap(), BM_ASSERT, bm::bit_out< TEncoder >::flush(), bm::gap_max_bits, bm::set_block_bitgap_bienc, and bm::set_block_size.
void bm::serializer< BV >::byte_order_serialization | ( | bool | value | ) |
Set byte-order serialization (for cross platform compatibility)
value | - TRUE serialization format includes byte-order marker |
Definition at line 1281 of file bmserial.h.
Referenced by compress_inv_dump_file(), convert_bv2bvs(), main(), and bm::serialize().
bool bm::serializer< BV >::compute_sim_model | ( | xor_sim_model_type & | sim_model, |
const bv_ref_vector_type & | ref_vect, | ||
const bm::xor_sim_params & | params | ||
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Calculate XOR similarity model for ref_vector refernece vector must be associated before.
sim_model | - [out] similarity model to compute |
ref_vect | - [in] reference vectors |
params | - parameters to regulate search depth |
Definition at line 1316 of file bmserial.h.
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Encode bit-block as an array of bits.
Definition at line 2286 of file bmserial.h.
References bm::bit_block_convert_to_arr(), bm::set_block_arrbit, and bm::set_block_arrbit_inv.
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Encode bit-block using digest (hierarchical compression)
Definition at line 2111 of file bmserial.h.
References bm::bmi_blsi_u64(), bm::bmi_bslr_u64(), bm::set_block_bit, bm::set_block_bit_digest0, bm::set_block_digest_wave_size, bm::set_block_size, and bm::word_bitcount64().
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Encode BIT block with repeatable runs of zeroes.
Definition at line 2059 of file bmserial.h.
References BM_ASSERT, bm::set_block_bit_0runs, and bm::set_block_size.
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Encode GAP block
Definition at line 1999 of file bmserial.h.
References BM_ASSERT, BM_FALLTHROUGH, bm::gap_convert_to_arr(), bm::gap_equiv_len, bm::encoder::put_16(), bm::encoder::put_8(), bm::set_block_arrgap, bm::set_block_arrgap_bienc, bm::set_block_arrgap_bienc_inv, bm::set_block_arrgap_egamma, bm::set_block_arrgap_egamma_inv, bm::set_block_arrgap_inv, bm::set_block_bit_1bit, bm::set_block_gap, and bm::set_block_gap_bienc.
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Encode serialization header information.
Definition at line 1336 of file bmserial.h.
References bm::BM_HM_64_BIT, bm::BM_HM_DEFAULT, bm::BM_HM_HXOR, bm::BM_HM_NO_BO, bm::BM_HM_NO_GAPL, bm::BM_HM_RESIZE, bm::globals< T >::byte_order(), bm::gap_levels, and bm::id_max.
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Encode XOR match chain.
Definition at line 2164 of file bmserial.h.
References BM_ASSERT, bm::check_pair_vect_vbr(), and bm::set_block_xor_chain.
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Determine best representation for a bit-block.
Definition at line 1780 of file bmserial.h.
References bm::best_representation(), bm::bit_block_change_bc(), bm::bit_block_count(), bm::bit_count_nonzero_size(), bm::block_waves, BM_ASSERT, bm::calc_block_digest0(), bm::compute_s_block_descr(), bm::e_bit_0, bm::e_bit_1, bm::e_bit_bit, bm::e_bit_end, bm::e_bit_GAP, bm::e_bit_IINT, bm::e_bit_INT, bm::gap_equiv_len, bm::gap_max_bits, bm::gap_max_buff_len, bm::block_waves_xor_descr::sb_bc, bm::block_waves_xor_descr::sb_gc, bm::set_block_aone, bm::set_block_arrbit, bm::set_block_arrbit_inv, bm::set_block_arrgap_egamma, bm::set_block_arrgap_egamma_inv, bm::set_block_azero, bm::set_block_bit, bm::set_block_bit_0runs, bm::set_block_bit_1bit, bm::set_block_bit_digest0, bm::set_block_digest_wave_size, bm::set_block_gap_egamma, bm::set_block_size, and bm::word_bitcount64().
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Determine best representation for a bit-block (level 5)
Definition at line 1664 of file bmserial.h.
References bm::bit_block_change_bc(), bm::bit_count_nonzero_size(), bm::calc_block_digest0(), bm::gap_max_bits, bm::gap_max_buff_len, bm::set_block_aone, bm::set_block_arr_bienc, bm::set_block_arr_bienc_inv, bm::set_block_arrbit, bm::set_block_arrbit_inv, bm::set_block_arrgap, bm::set_block_arrgap_bienc, bm::set_block_arrgap_bienc_inv, bm::set_block_arrgap_egamma, bm::set_block_arrgap_egamma_inv, bm::set_block_arrgap_inv, bm::set_block_azero, bm::set_block_bit, bm::set_block_bit_0runs, bm::set_block_bit_1bit, bm::set_block_bit_digest0, bm::set_block_bitgap_bienc, bm::set_block_gap_bienc, bm::set_block_gap_egamma, bm::set_block_size, and bm::word_bitcount64().
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Determine best representation for GAP block based on current set compression level.
Definition at line 1948 of file bmserial.h.
References bm::gap_bit_count_unr(), bm::gap_length(), bm::gap_max_bits, bm::set_block_arrgap, bm::set_block_arrgap_bienc, bm::set_block_arrgap_bienc_inv, bm::set_block_arrgap_egamma, bm::set_block_arrgap_egamma_inv, bm::set_block_arrgap_inv, bm::set_block_bit_1bit, bm::set_block_gap, bm::set_block_gap_bienc, and bm::set_block_gap_egamma.
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Definition at line 2314 of file bmserial.h.
References bm::bit_block_convert_to_arr(), bm::set_block_bit, and bm::set_block_size.
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Encode GAP block as delta-array with Elias Gamma coder.
Definition at line 1487 of file bmserial.h.
References bm::bit_out< TEncoder >::gamma(), bm::set_block_arrgap, bm::set_block_arrgap_egamma, bm::set_block_arrgap_egamma_inv, and bm::set_block_arrgap_inv.
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Definition at line 2305 of file bmserial.h.
References bm::bit_to_gap(), BM_ASSERT, and bm::gap_equiv_len.
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Encode GAP block with Elias Gamma coder
Definition at line 1448 of file bmserial.h.
References bm::for_each_dgap(), bm::gap_length(), bm::set_block_gap, and bm::set_block_gap_egamma.
void bm::serializer< BV >::gap_length_serialization | ( | bool | value | ) |
Set GAP length serialization (serializes GAP levels of the original vector)
value | - when TRUE serialized vector includes GAP levels parameters |
Definition at line 1275 of file bmserial.h.
Referenced by compress_inv_dump_file(), convert_bv2bvs(), main(), bm::serialize(), bm::compressed_collection_serializer< CBC >::serialize(), and bm::sparse_vector_serializer< SV >::sparse_vector_serializer().
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Get current compression level.
Definition at line 133 of file bmserial.h.
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Return serialization counter vector.
Definition at line 196 of file bmserial.h.
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Definition at line 2505 of file bmserial.h.
References bm::bit_out< TEncoder >::bic_encode_u16(), bm::bit_block_convert_to_arr(), BM_ASSERT, bm::bit_out< TEncoder >::flush(), bm::set_block_arr_bienc, bm::set_block_arr_bienc_8bh, bm::set_block_arr_bienc_inv, and bm::set_block_size.
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Encode GAP block with using binary interpolated encoder
Definition at line 1388 of file bmserial.h.
References bm::bit_out< TEncoder >::bic_encode_u16(), BM_ASSERT, bm::bit_out< TEncoder >::flush(), bm::gap_length(), bm::set_block_gap, bm::set_block_gap_bienc, and bm::set_block_gap_bienc_v2.
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Encode GAP block as an array with binary interpolated coder.
Definition at line 1580 of file bmserial.h.
References bm::bit_out< TEncoder >::bic_encode_u16(), BM_ASSERT, bm::bit_out< TEncoder >::flush(), bm::set_block_arrgap, bm::set_block_arrgap_bienc_inv_v2, bm::set_block_arrgap_bienc_v2, and bm::set_block_arrgap_inv.
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Definition at line 1532 of file bmserial.h.
References bm::bit_out< TEncoder >::bic_encode_u16(), BM_ASSERT, bm::bit_out< TEncoder >::flush(), bm::bit_out< TEncoder >::gamma(), bm::set_block_arrgap, bm::set_block_arrgap_bienc, bm::set_block_arrgap_bienc_inv, and bm::set_block_arrgap_inv.
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encode bit-block as interpolated gap block
Definition at line 2345 of file bmserial.h.
References bm::bit_to_gap(), BM_ASSERT, and bm::gap_max_bits.
void bm::serializer< BV >::optimize_serialize_destroy | ( | BV & | bv, |
typename serializer< BV >::buffer & | buf | ||
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Bitvector serialization into buffer object (resized automatically) Input bit-vector gets optimized and then destroyed, content is NOT guaranteed after this operation.
Effectively it moves data into the buffer.
The reason this operation exsists is because it is faster to do all three operations in one single pass. This is a destructive serialization!
bv | - input/output bitvector |
buf | - output buffer object |
Definition at line 2268 of file bmserial.h.
References bm::serialize().
Referenced by main().
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Check if bookmark needs to be placed and if so, encode it into serialization BLOB.
nb | - block idx |
bookm | - bookmark state structure |
enc | - BLOB encoder |
Definition at line 2596 of file bmserial.h.
References BM_ASSERT, bm::set_nb_bookmark16, bm::set_nb_bookmark24, bm::set_nb_bookmark32, bm::set_nb_sync_mark16, bm::set_nb_sync_mark24, bm::set_nb_sync_mark32, bm::set_nb_sync_mark48, bm::set_nb_sync_mark64, and bm::set_nb_sync_mark8.
void bm::serializer< BV >::reset_compression_stats |
Reset all accumulated compression statistics.
Definition at line 1247 of file bmserial.h.
void bm::serializer< BV >::serialize | ( | const BV & | bv, |
typename serializer< BV >::buffer & | buf, | ||
const statistics_type * | bv_stat = 0 |
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Bitvector serialization into buffer object (resized automatically)
bv | - input bitvector |
buf | - output buffer object |
bv_stat | - input (optional) bit-vector statistics object if NULL, serialize will compute the statistics |
Definition at line 2244 of file bmserial.h.
References BM_ASSERT, bm::bv_statistics::max_serialize_mem, and bm::serialize().
serializer< BV >::size_type bm::serializer< BV >::serialize | ( | const BV & | bv, |
unsigned char * | buf, | ||
size_t | buf_size | ||
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Bitvector serialization into memory block.
bv | - input bitvector |
buf | - out buffer (pre-allocated) No range checking is done in this method. It is responsibility of caller to allocate sufficient amount of memory using information from calc_stat() function. |
buf_size | - size of the output buffer |
Definition at line 2706 of file bmserial.h.
References bm::bit_block_find(), BM_ASSERT, bm::BM_HM_SPARSE, BM_IS_GAP, BM_SER_NEXT_GRP, BMGAP_PTR, bm::block_match_chain< BLOCK_IDX >::chain_size, bm::check_block_one(), bm::check_block_zero(), bm::e_no_xor_match, bm::e_xor_match_BC, bm::e_xor_match_EQ, bm::e_xor_match_GC, bm::e_xor_match_iBC, FULL_BLOCK_FAKE_ADDR, bm::get_block_coord(), bm::block_match_chain< BLOCK_IDX >::match, bm::block_match_chain< BLOCK_IDX >::nb, bm::encoder::put_16(), bm::encoder::put_32(), bm::encoder::put_64(), bm::encoder::put_8(), bm::encoder::put_8_16_32(), bm::encoder::put_prefixed_array_32(), bm::block_match_chain< BLOCK_IDX >::ref_idx, bm::set_block_16one, bm::set_block_16zero, bm::set_block_1one, bm::set_block_1zero, bm::set_block_32one, bm::set_block_32zero, bm::set_block_64one, bm::set_block_64zero, bm::set_block_8one, bm::set_block_8zero, bm::set_block_aone, bm::set_block_arr_bienc, bm::set_block_arr_bienc_inv, bm::set_block_arrbit, bm::set_block_arrbit_inv, bm::set_block_arrgap_bienc, bm::set_block_arrgap_bienc_inv, bm::set_block_arrgap_egamma, bm::set_block_arrgap_egamma_inv, bm::set_block_azero, bm::set_block_bit, bm::set_block_bit_0runs, bm::set_block_bit_1bit, bm::set_block_bit_digest0, bm::set_block_bitgap_bienc, bm::set_block_end, bm::set_block_gap_bienc, bm::set_block_gap_egamma, bm::set_block_ref_eq, bm::set_block_size, bm::set_block_xor_ref16, bm::set_block_xor_ref16_um, bm::set_block_xor_ref32, bm::set_block_xor_ref32_um, bm::set_block_xor_ref8, bm::set_block_xor_ref8_um, bm::encoder::set_pos(), bm::set_sub_array_size, bm::set_total_blocks, bm::encoder::size(), and bm::block_match_chain< BLOCK_IDX >::xor_d64.
Referenced by convert_bv2bvs(), generate_k_mers(), main(), make_BLOB(), bm::serialize(), and bm::compressed_collection_serializer< CBC >::serialize().
void bm::serializer< BV >::set_bookmarks | ( | bool | enable, |
unsigned | bm_interval = 256 |
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Add skip-markers to serialization BLOB for faster range decode at the expense of some BLOB size increase.
enable | - TRUE searilization will add bookmark codes |
bm_interval | - bookmark interval in (number of blocks) suggested values between 4 and 512 (block size is 64K bits) smaller interval means more bookmarks added to the skip list allows faster range deserialization at the expense of somewhat increased BLOB size. |
Definition at line 1287 of file bmserial.h.
Referenced by generate_k_mers(), main(), and bm::sparse_vector_serializer< SV >::set_bookmarks().
void bm::serializer< BV >::set_compression_level | ( | unsigned | clevel | ) |
Set compression level.
Higher compression takes more time to process.
clevel | - compression level (0-6) 0 - take as is 1, 2 - apply light weight RLE/GAP encodings, limited depth hierarchical compression, intervals encoding 3 - variant of 2 with different cut-offs 4 - delta transforms plus Elias Gamma encoding where possible legacy) 5 - Binary Interpolative Coding (BIC) - light settings 6 - Binary Interpolative Coding (BIC) - harder settings |
Definition at line 1254 of file bmserial.h.
References bm::set_compression_max, bm::sparse_max_l5, and bm::sparse_max_l6.
Referenced by compress_inv_dump_file(), convert_bv2bvs(), main(), and make_BLOB().
void bm::serializer< BV >::set_curr_ref_idx | ( | size_type | ref_idx | ) |
Set current index in rer.vector collection (not a row idx or plain idx)
Definition at line 1330 of file bmserial.h.
void bm::serializer< BV >::set_ref_vectors | ( | const bv_ref_vector_type * | ref_vect | ) |
Attach collection of reference vectors for XOR serialization (no transfer of ownership for the pointers)
Definition at line 1302 of file bmserial.h.
References bm::set_block_size.
void bm::serializer< BV >::set_sim_model | ( | const xor_sim_model_type * | sim_model | ) |
Atach XOR similarity model (must be computed by the same ref vector)
Definition at line 1324 of file bmserial.h.
void bm::serializer< BV >::set_sparse_cutoff | ( | unsigned | cutoff | ) |
Fine tuning for Binary Interpolative Compression (levels 5+) The parameter sets average population count per block (64Kbits) below which block is considered very sparse.
If super block (group of 256 blocks) is very sparse it applies block size expansion (for the compression purposes) to improve compression rates.
Definition at line 1265 of file bmserial.h.
References BM_ASSERT, and bm::sparse_max_l6.
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Compute digest based XOR product, place into tmp XOR block.
Definition at line 2209 of file bmserial.h.
References bm::bit_block_xor(), BM_IS_GAP, BMGAP_PTR, and bm::gap_convert_to_bitset().