Bit-plane splicing of a GAP block. More...
#include <bmtrans.h>
Public Types | |
| typedef tmatrix< GT, static_cast< unsigned >(sizeof(GT) *8), static_cast< unsigned >(((BLOCK_SIZE *sizeof(unsigned))/(sizeof(GT)))/(sizeof(GT) *8))> | tmatrix_type |
| cryptic calculation of equivalent size for the transpose matrix based on BLOCK_SIZE and sizeof(GT)(16) More... | |
Public Member Functions | |
| gap_transpose_engine () | |
| void | transpose (const GT *BMRESTRICT gap_buf, BT *BMRESTRICT tmp_block) |
| Transpose GAP block through a temp. More... | |
| void | transpose (const GT *BMRESTRICT garr, unsigned garr_size, BT *BMRESTRICT tmp_block) |
| Transpose array of shorts. More... | |
| void | compute_distance_matrix () |
| More... | |
| void | reduce () |
| More... | |
| void | restore () |
| More... | |
| void | trestore (GT gap_head, GT *BMRESTRICT gap_buf, BT *BMRESTRICT tmp_block) |
| Restore GAP block from the transposed matrix. More... | |
Data Fields | |
| tmatrix_type | tmatrix_ |
| More... | |
| unsigned | eff_cols_ |
| More... | |
| unsigned | distance_ [tmatrix_type::n_rows][tmatrix_type::n_rows] |
| More... | |
| unsigned char | pc_vector_ [tmatrix_type::n_rows] |
| More... | |
| unsigned | pc_vector_stat_ [bm::ibpc_end] |
| More... | |
| tmatrix_type::rstat | rstat_vector_ [tmatrix_type::n_rows] |
Detailed Description
class bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >
Bit-plane splicing of a GAP block.
GT - gap word type BT - block word type BLOCK_SIZE - bit block size in words (works as a transposition basis)
Member Typedef Documentation
◆ tmatrix_type
| typedef tmatrix<GT, static_cast<unsigned>(sizeof(GT)*8), static_cast<unsigned>(((BLOCK_SIZE * sizeof(unsigned)) / (sizeof(GT))) / (sizeof(GT) * 8))> bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::tmatrix_type |
Member Function Documentation
◆ compute_distance_matrix()
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inline |
Definition at line 801 of file bmtrans.h.
References bm::bit_iblock_make_pcv(), bm::bit_iblock_pcv_stat(), bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::distance_, bm::tmatrix< GT, static_cast< unsigned >(sizeof(GT) *8), static_cast< unsigned >(((BLOCK_SIZE *sizeof(unsigned))/(sizeof(GT)))/(sizeof(GT) *8))>::n_columns, bm::tmatrix< GT, static_cast< unsigned >(sizeof(GT) *8), static_cast< unsigned >(((BLOCK_SIZE *sizeof(unsigned))/(sizeof(GT)))/(sizeof(GT) *8))>::n_rows, bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::pc_vector_, bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::pc_vector_stat_, bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::tmatrix_, and bm::tmatrix_distance().
◆ reduce()
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inline |
Definition at line 817 of file bmtrans.h.
References bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::eff_cols_, bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::pc_vector_, bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::tmatrix_, and bm::tmatrix_reduce().
◆ restore()
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inline |
Definition at line 823 of file bmtrans.h.
References bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::eff_cols_, bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::pc_vector_, bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::tmatrix_, and bm::tmatrix_restore().
◆ transpose() [1/2]
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inline |
Transpose GAP block through a temp.
block of aligned(!) memory
Definition at line 759 of file bmtrans.h.
References BM_ASSERT, bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::eff_cols_, bm::find_effective_columns(), bm::gap_2_bitblock(), bm::tmatrix< GT, static_cast< unsigned >(sizeof(GT) *8), static_cast< unsigned >(((BLOCK_SIZE *sizeof(unsigned))/(sizeof(GT)))/(sizeof(GT) *8))>::n_columns, bm::tmatrix< GT, static_cast< unsigned >(sizeof(GT) *8), static_cast< unsigned >(((BLOCK_SIZE *sizeof(unsigned))/(sizeof(GT)))/(sizeof(GT) *8))>::n_rows, and bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::tmatrix_.
◆ transpose() [2/2]
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inline |
Transpose array of shorts.
Definition at line 780 of file bmtrans.h.
References bm::bit_block_set(), BM_ASSERT, bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::eff_cols_, bm::find_effective_columns(), bm::tmatrix< GT, static_cast< unsigned >(sizeof(GT) *8), static_cast< unsigned >(((BLOCK_SIZE *sizeof(unsigned))/(sizeof(GT)))/(sizeof(GT) *8))>::n_columns, bm::tmatrix< GT, static_cast< unsigned >(sizeof(GT) *8), static_cast< unsigned >(((BLOCK_SIZE *sizeof(unsigned))/(sizeof(GT)))/(sizeof(GT) *8))>::n_rows, and bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::tmatrix_.
◆ trestore()
|
inline |
Restore GAP block from the transposed matrix.
Definition at line 831 of file bmtrans.h.
References BM_ASSERT, bm::tmatrix< GT, static_cast< unsigned >(sizeof(GT) *8), static_cast< unsigned >(((BLOCK_SIZE *sizeof(unsigned))/(sizeof(GT)))/(sizeof(GT) *8))>::n_columns, bm::tmatrix< GT, static_cast< unsigned >(sizeof(GT) *8), static_cast< unsigned >(((BLOCK_SIZE *sizeof(unsigned))/(sizeof(GT)))/(sizeof(GT) *8))>::n_rows, and bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::tmatrix_.
The documentation for this class was generated from the following file:
